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May 12, 2008

A large earthquake (reported by USGS as Mw=7.8 or 7.9 Ms=8.0 or Mb=7.1 reported magnitude has been upgraded from 7.8 to 7.9) hit China this morning. Earthquakes in China are potentially devastating, initial reports on the BBC suggested that this was a sparsley populated area and many buildings in cities nearby were evacuated no casualties had been reported by(09:30). UPDATE by 5pm there are reports of 8000 fatalaties (including an entire school). This number of casualties is only likely to increase as rescuers reach the affected areas.

The event was spotted by George Marshall at Robert Smyth school on his seismometer before he checked the news.

The signal at KEYW shows P(06:39) PP(06:42) S(06:49) SS(06:53) Surface Waves(7am onwards). The Surface waves registered near the maximum possible on the SEP system (30,000 counts) giving a an estimate of surface wave magnitude >8.5. If you did not record this event then your station is not working.
more info on this event at http://earthquake.usgs.gov/eqcenter/recenteqsww/Quakes/us2008ryan.

Keywords: CHINA, Earthquake, KEYW

Posted by Paul Denton @ School Seismology | 2 comment(s)

April 16, 2008

 

                     

Checking my e-mail this morning the e-mail alert from USGS flagged up the M 6.6 event at 05:54:23 today, checking the seismometer display clearly showed the trace and the earlier M 6.5 event at 22:59:55 yesterday. The USGS site shows there to have been 72 events of various magnitude since the M6.5 event 15/04/08 along the Aleutian island chain.

Pete Hill

Paulet High school

Keywords: Aleutian isles, PAUL, USGS

Posted by Pete Hill @ School Seismology | 1 comment(s)

Over the course of the last few years there has been an internet revolution; one which changes the way we interact with each other and the way in which we use data.  Web 2.0 has emerged, providing a means for users of the internet to also be creators, providing a platform for data exchange hitherto unprecedented.  As a consequence, there is a wealth of information now available to research scientists.  Without a parallel development in working practices, this mine of information can be inaccessible to researchers, relevant data proving either too hard to find amongst the vast amounts of information out there, or worse proving unsubstantiated or erroneous due to a lack of validation.  This article discusses the current changes in information type and quantity that are relevant to the environmental scientists, and looks at the changes in working practice that must accompany them.

 The information needs of environmental scientists have changed over time, as do all things.  The transition from paper to digital media for data storage along with the rise of the internet and changes in the way we view data has massive consequences for how we all process and use information. How has the nature and quantity of information available to, and useful for, the environmental scientist changed over time?  The changes have been both in the way any kind of information is now delivered, and how environmental research data is now delivered, including changes in the form it takes.


The WorldWide Web was released by CERN in 1992, and began to be adopted in the broader scheme of things in 1994, after the first international conference.  Since then, there has been an information explosion, which has led to “information overload” in some cases, the point at which older working practices were no longer efficient in their application.  The number of websites online grows by around 7 million per month, many of which are not of use to environmental scientists, but some of which will be.  Not least in this respect have the information needs of environmental scientists changed; they now have to discover from amongst all of this information the relevant information for their research.  This problem is exacerbated by the multi-disciplinary nature of the research of most environmental scientists.  In such cases, they are foraging in the unfamiliar territory of a discipline in which they are not expert, and sometimes may not even be sure of the terminology required to answer their questions.  The 2007 Richard Dimbleby lecture exemplified the mutidisciplinary nature of environmental research.  The talk was by Dr. J Craig Venter, a geneticist who is now working on solving the global energy problem with the use of artificial life.


The volume of conventional, peer-reviewed articles published rocketed in many disciplines in the mid-90s.  Since then, there has been a steady increase in the number of articles published each year, and this holds true for environmental sciences as much as any other discipline.  Figure 1 shows the number of environmental science related articles published in the Chemistry discipline per year from 1989 to the present day (including prospective publications). 


Three articles were added in the 24hrs between my taking this screenshot and writing this text, all of which were based on air-quality and atmospheric pollution.  A similar trend is observable when carrying out searches into global warming, ecosystems, pollution, biodiversity and other key areas for environmental science. 


Researchers now have to deal not only with the vastly increasing yearly volume of articles published, but also with the cumulative effect of this having been the case for many years.  Adding to the publishing house journals, in 2002 came the first major Open Access journal statement, whereby peer-reviewed articles are made freely available online immediately on their publication.  Since then the Open Access initiative has continued to grow and gain support from similarly minded academics, increasing the numbers of articles further.  On top of these traditional sources of information, new media forms are changing the face of communication and information delivery.


The term “Web2.0” was first coined by Dale Dougherty in 2004.  It has been seen as a new model for the web, and is in fact closer to Tim Berners-Lee’s original vision of what the web could be at its conception in 1989.  Essentially, Web2.0 is considered to be the second generation of the worldwide web, with an infrastructure based on improvements made in the 1990s that facilitate greater user input, data exchange and collaboration. Web server statistics show that the number of blogging websites online grows by 5% per month, and the MySpace community is responsible for massive growth per month, with 67 million visits.  The emergence of Web2.0 means that there is a much larger input of content into the web than before (Figure 2); necessarily so, because there are more and more people adding content.  Social networking also adds to information exchange by putting people in touch with each other and providing a closer perspective on their work.  The ease with which various media types can now be uploaded means that there is now video, audio and software available to benefit researchers, in addition to the more conventional text versions of articles, databases, reports, legislation, blogs and forums.

Figure 1. Scopus results for chemistry publications related to environmental science

 

The sciences have already adopted Web2.0, with a number of notable initiatives emerging in the last few years.  Aside from Open Access journals and blogs, many eScience projects were early adopters of wikis. Examples of progressive use of Web2.0 are emerging, such as myExperiment, software that has been produced through collaboration between the Universities of Manchester and Southampton in the UK.  The tool allows researchers to share scientific workflows and digital data.  Work at the University of Cambridge and the National Institute of Environmental eScience (NIEeS) has generated SciSpace, which focusses on professional networking, data exchange, and support to collaborations from project conception to publication.  The Nature publishing group has also developed a networking environment, Nature Network, presently active in the US and the UK.

 

There are two problems with the increasing amount and different forms of available data. Not only is the difficulty the fact that the relevant data that is sought by environmental scientists is hidden in this quagmire of information, and accordingly that the search mechanisms for extracting it must develop to address this problem.  In addition, the amount of data that each researcher can use has vastly increased, so that now researchers need to employ programs in order to process their data.  This problem is somewhat analogous to the issue that the web encountered when the number of users escalated quickly.  There was so much information traffic that the networks couldn’t cope.  A more complex solution was needed, and researchers at UCL developed a way to employ mathematical algorithms to model the differences in data flow in order to manage the traffic more efficiently.  Researchers are already changing the way they work, for example by employing RSS aggregators to keep up-to-date with journal alerts and relevant news items.  New search tools (e.g. Scopus) have evolved that not only search through peer-reviewed literature but also search reports and websites that will contain information of interest.  However, it is clear that environmental scientists are not always aware of how best to direct their research, and there are always things that might be missed.  What is needed, perhaps, is a standardised, aggregated interface to multimedia information retrieval that is broader than current tools, searching non-textual, multimedia information as well through tagging and keywords.

Figure 2. Count of archived media from web resources (archive.org) featuring the keyword “environment” as a function of year.



 

The trend in research funding from the main UK Research Councils tells a unified story with respect to environmental science funding.  The main drive is towards battling climate change, pollution by toxic substances, and research into sustainability.  Additionally, the UK Research Councils have a new initiative for knowledge transfer from environmental science research to commercialisation.  The focal points towards which research has been steered reflects the trend in public interest and in governmental and global legislation.  Environmental awareness has now been raised by the government and non-profit organisations, such that the pressure on commercial enterprises has become so great that they too are showing an environmental awareness.  The knowledge transfer aspect of funding initiatives adds another aspect to the already multi-disciplinary nature of environmental research.  In the case of any applied research now, the researchers will benefit from entrepreneurial nous, or at least the possibility of networking and cultivating relationships with people who readily possess such. 


Finally, a problem that faces all researchers today, but especially those in environmental sciences, due to the high profile and highly important nature of the research, is the politicisation of the available data.  For example, wikipedia has now had to lock down its pages on climate change due to the frequent addition of biased information placed by those with a vested interest or personal agenda.  Here, then, is a very important issue with information provision today; that of validation and authenticity.  The researcher must be able to trust the information they find through new media, an aspect of Web2.0 that is still being addressed.

Posted by Kat Austen | 2 comment(s)

March 21, 2008

At 22:33 last night (20th March) there was a M7.2 event in China.  My initial reaction to seeing the email was mixed... China is the location of the worlds most devasting earthquakes.   Fortunately this event happend in a sparsley populated region in Xinjiang province and no reports of casualties have been posted.

Stations KEYW and PAUL (whose data is is uploaded automatically to the IRIS ftp site) both recorded this event very well (it is about 58 degrees away from the UK).  On station KEYW you can clearly see arrivals for P(22:43) PP(22:45) S(22:51) SS(22:55) and Surface waves  (23:00-23:30)

0803202232keyw.sac

Posted by Paul Denton @ School Seismology | 2 comment(s)

March 06, 2008

The search for the ultimate colalboration tool continues.

Against an 11-point matrix of requirements, I developed from a wish list drawn up by Phil Standford (NOC), I have begun a crude but effective evaluation of products.

So far I've seen/have access to:

SciSpace.net
CEH's wiki
VOCAL (Liverpool University's tool)

Also on my list of things to look at are:

Sakai
Clearspace
Openfire

But it's difficult to look at the latter three as there don't appear to be any live instances in NERC/the science community for me to look at!

Elsewhere...

I had a brilliantly productive day at the University of Birmingham last week where the mention of 'collaborative tool' set them alight with enthusiasm.

Their forthcoming requirement on a NERC-funding science project is to establish a project team in Birmingham, UEA, Keele, London, NOC and BAS - with almost the full range of tools and functionality that comprise the matrix I've developed (that's a relief!).

More later - Case Studies Database demonstration in five minutes; preparation to be done!

B.

 

Posted by Brennig Jones | 8 comment(s)

February 29, 2008

The Market Rasen earthquake has enabled several schools involved in the project to get local press coverage for their school and the project.
Of particular note are Paulet High school (Burton on Trent)on radio Derby and King Edwards High School (Edgbaston) on BBC Midlands today

Seismometerclip.WMV

Posted by Paul Denton @ School Seismology | 1 comment(s)

February 18, 2008

Hi,

My name is Brennig Jones, I'm a project manager for NERC.

I'm based at the Swindon campus but frequently visit other locations such as NERC's research centres (e.g. The British Antarctic Suvey, British Geological Survey, Proudman Oceanographic Lab and the Centre for Ecology & Hydrology).

I am currently working on three projects:

1. Case Studies Database (a web application through which members of the public may interrogate NERC science to view the work we undertake - against a whole range of search and/or filtering capabilities - and how the funding of science is applied)


2. Planet Earth Online (the transformation of NERC's award-winning publication Planet Earth in to a web-enabled magazine), and:

3. A study on collaborative tools (to assist - through the deployment of a range of collaborative tools - scientific projects that involve participants and potential participants to share dialogue and documentation).

It is point 3. that's brought me here in an attempt to test the water with regards to scispace.net and its functionality, and also to try to make contact with other folk who may have an interest in collaborative tools.

If anyone would like to contact me - just drop me a line.

B

Posted by Brennig Jones | 5 comment(s)

November 11, 2007

I have been with OS X 10.x since x was zero (I am afraid that I didn't ever try the public beta because it seemed to be impossible to actually work with it). It was fun being an early adopter. Things were rough around the edges, but we were getting an idea of a new way of working. I still remember when I first saw the dock with its magnification, and it was striking just how different it was. 10.1 came as a free upgrade (what else could Apple do – 10.0 really wasn't really ready for production use except for the adventurous few). 10.2 saw what I thought was a proper professionalisation of OS X, and 10.3 saw what I thought was more-or-less the completion of the transition (with new features such as Exposé and fast user switching). During these versions we saw the introduction of tools such as ichat, and public beta versions of ical, isync, safari and X11. It was actually quite exciting.

Then we got to 10.4, which seemed to be to be somewhat underwhelming. I fear I have hardly made any use of widgets at all, mostly because they didn't seem to give me anything of value that a bookmarked browser would give. Spotlight seemed like a decent idea, but over time it seemed to me to be not quite as useful as I had been hoping. 10.4 stuck me, in conclusion, as being a set of small upgrades that certainly improved things in many ways (including new tools such as Dictionary), but without any obvious vision.

So we come to 10.5, which seemed to me to be prefaced by quite a lot of hype. Having now had it running on my three systems for a few days, I am no less underwhelmed than I was with 10.4. In fact it is worse, because some of the things I was hoping for seem not to work. In fact, I wonder whether in the rush to get 10.5 released (remember it was slowed down by the iPhone – it is almost as if 10.5 took too low a priority within Apple) there are too many loose ends still remaining to be tied. Take for example the translucent menu bar. Whilst this appears to be reviled by many, there appears to be no way to change how transparent it is. But there are a number of systems for which there is no transparency at all, and a strange note to this effect in Apple's knowledge base. I don't care whether I have a transparent menu bar or not, but the fact that I am supposed to have it and don't suggests to me that we will be seeing some bug fixes in the coming months.

The feature I was really looking forward to was "Back to my mac". I have a .mac account and I do need to access my home computer from other places. But it just doesn't work, and again, there is a page on this in Apple's knowledge base.

Spaces is a nice feature and appears to be better implemented than VirtueDesktop which I had before (I had to give up on that because palettes became separated from main windows in applications such as Pages – Spaces appears to do a better job in this regard). However, it is not near to being perfect. I don't always end up in the right place when going to a different application, and too often I watch it going around various windows before it finds what I want (making one almost sea sick!). It doesn't always go to an open Finder window correctly.

I will never use Bootcamp nor Webclip. Dictionary having access to wikipedia is neat, but hardly essential. When I buy a new disk Time Machine looks worth a look (I don't want to overwrite my current backup disks). I hope that Spotlight proves more useful that its previous incarnation. I am hoping that Stacks will work, but I suspect it will need a bit more work than I was hoping. Finder coverflow seems to me to be too slow to be useful. On a negative, something in the security model (probably with TSL) has killed my use of my department's email system.

In short, 10.5 looks different round the edges, and it seems to have some small useful tweaks (like Dictionary), but I see no big vision. In fact I would say that the number of small tweaks is actually quite impressive, and I can imagine it being fun coming across them one by one. For example, I have just come across the link between Address Book and Google Maps. It is nice. Screen sharing could be interesting, but when I tried it out my daughter was using my desktop and it came down to a tool for spying! 'Creepy' was the reaction. Icon preview could be useful, but there will be times when it might be a nuisance. Quicklook might be better.

What seems to me to be a pity is that some nice tweaks could be given away for free in the incremental updates. For example, adding tabs to terminal, or obtaining address information from emails, are small tweaks that would be nice to suddenly fund in an incremental update. The fact that Apple stores these up for one of the 300 new features in a large paid-for upgrade suggests to me that Apple is running out of a big vision for OS X. Of course, it would be churlish to complain, because effectively we now have a very robust and usably operating system that is apparently very hard to improve upon. 

Keywords: 10.5, Apple, Mac, Mac OS X, OS X, OS X 10.5

Posted by Martin Dove | 2 comment(s)

July 17, 2007

An exciting development that I noticed on the ISDE5 blog: Taylor and Francis are producing a Digital Earth journal:

http://isde5.blogspot.com/2007/01/digital-earth-science-gets-own- 

http://www.tandf.co.uk/journals/titles/17538947.asp

Call for papers: http://www.tandf.co.uk/journals/cfp/tjdecfp.pdf

NOTE: I'm collecting a list of relevant journals on the Wiki

Keywords: journals

Posted by Jon Blower @ Geobrowsers | 3 comment(s)

July 16, 2007

Second half of June and into July was a bit of a write-off due to exams, travels, grant proposal writing and the like.

But now I am back to the work on Akermanite. My task is to fit simple models for the energies between pairs of atoms using the CASTEP calculations as my reference data. Specifically, we have energies and equilibrium structures for all pressures to use as data, and I plan to fit the values of the charges and the parameters in the functions of the form:

E(r) = B.exp(-r/rho) – C/r^6

where B, rho and C are parameters. I am doing this for all atom pairs, but aim to only fit C for O–O and Si–O, and use fitted values of rho (because of parameter correlations). 

I have tried using the variable pressure data, and then looking at a single pressure, but in short it is not working well. The problem can be seen by looking at the resultant structure:

[You do not have permission to access this file] 

What is clear is that an oxygen atom wants to move down into the plane of Ca atoms, and the MgO4 tetrahedron becomes a square. The structure retains elements of its original topology, but is creating new bonds. This is of course allowed by the form of the potentials, which usually work much better. But we know that Akermanite has a slightly odd structure, so perhaps we need to use functions with somewhat better definition.

In this regard, I did try using harmonic bond-angle potentials for the O–Si–O and O–Mg–O bonds, but this didn't do too much for me. 

 

 

Posted by Martin Dove @ Akermanite case study | 9 comment(s)

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